PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000604.1_g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 240aa    MW: 25344.5 Da    PI: 8.8798
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000604.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001292114123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ykC+ C+k F +   L  H  +H
  Itr_sc000604.1_g00014.1  92 YKCSVCDKAFGSYQALGGHKASH 114
                              9*********9999998888777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.75E-992166No hitNo description
SMARTSM003550.01892114IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-1392116IPR007087Zinc finger, C2H2
PROSITE profilePS501579.86892114IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
PfamPF139124.0E-11143168IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058144166IPR007087Zinc finger, C2H2
SMARTSM003551.8144166IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MALEALNSPT TPRPSVFQFE DPASLSYLDH QWAKAGKRSK RPRSVERQPT EEEYLALCLI  60
MLARGGGRPS APPSAAAPRP PAPPVSEQKL LYKCSVCDKA FGSYQALGGH KASHRKLAGA  120
GDDHPTTSTA TNGSAGAAST GRTHECSICH KCFPTGQALG GHKRCHYEGT IGNGGAGAGA  180
GTSSEGTGSS SNSLRNFDLN LPALPELSPV FLRRFADDEV ESPHPAKKAR LQIPTKLELF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621070.14e-89PREDICTED: zinc finger protein ZAT10-like
RefseqXP_016490511.14e-89PREDICTED: zinc finger protein ZAT10-like
SwissprotQ962892e-66ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLQ5TJD44e-85Q5TJD4_CATRO; Zinc finger DNA-binding protein
STRINGSolyc04g077980.1.11e-77(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-52salt tolerance zinc finger